# Copyright (c) 2018, Vanessa Sochat All rights reserved.
# See the LICENSE in the main repository at:
# https://www.github.com/openbases/openbases-python
from openbases.logger import bot
from openbases.utils import read_yaml
import os
import re
import sys
[docs]class Journal:
joss = 'joss'
rse = 'rse'
[docs]class Author:
'''an Author holds a name, orcid id, and affiliation'''
def __init__(self,
name,
orcid,
affiliation):
self.name = name
self.orcid = orcid
self.affiliation = affiliation
[docs]class Paper:
def __init__(self, filename, quiet=False):
self._check_inputs(filename)
self.metadata = read_yaml(filename, quiet=quiet)
def __str__(self):
return "<paper.md: %s>" % self.filename
def __repr__(self):
return self.__str__()
def __contains__(self, value):
return value in self.metadata
def _check_inputs(self, filename):
'''check to make sure that filename exists
Parameters
==========
filename: the markdown file to parse
'''
if not os.path.exists(filename):
bot.exit('Cannot find %s' % filename)
self.filename = os.path.abspath(os.path.realpath(filename))
[docs] def get(self, key, quiet=True, sep=',', field=None):
'''return a key from the yaml, default is silent (no print) if doesn't
exist. If the yaml item is a list with different subfields, then
field must also be defined.
'''
# If the arg is of format arg:field will return field from list
key = key.split(':')
if len(key) > 1:
field = key[1]
key=key[0]
if key in self.metadata:
value = self.metadata[key]
if isinstance(value, (tuple, list)):
# If the first entry is a dict
if isinstance(value[0], dict):
values = []
for entry in value:
if field in entry and field is not None:
if entry[field]:
values.append(entry[field])
value = values
print(sep.join(value))
else:
print(self.metadata[key])